Compiled by Jer-Ming Hu, March 2006
NOTE: B-class homologues in bryophytes and ferns are very diverse and can not be categorized in AP3 or PI lineages.
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Species |
APETALA3 |
PISTILLATA |
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paleoAP3 |
euAP3 |
TM6 |
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BRYOPHYTES |
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Funariales |
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Funariaceae |
Physcomitrella patens |
PPM2 (AF150933, p=AAG09137) |
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FERNS |
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Filicales |
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Pteridaceae |
Ceratopteris richardii |
CMADS3 (CRU95608, p=AAC24319) (=CRM1=CERMADS4) |
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GYMNOSPERMS |
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Gnetales |
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Gnetaceae |
Gnetum gnemon |
GGM2 (AJ132208, p=CAB44448), GGM13 (AJ132219, p=CAB44459), GGM3 (AJ132209, p=CAB44449) |
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Coniferales |
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Pinaceae |
Picea abies |
DAL12-1 (AF158541, p=AAF18374) |
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DAL11 (AF158539, p=AAF18372), DAL13 (AF158543, p=AAF18376) |
Pinus radiata |
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PrDGL (AF120097, p=AAF28863) |
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ANGIOSPERMS |
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Basal angiosperms |
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Amborellaceae |
Amborella trichopoda |
AmtAP3-1 (AY337743) AmtAP3-2 (AY337744) |
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AmtPI (AY337760) |
Chloranthaceae |
Chloranthus spicatus |
CsAP3 (AF230701, p=AAF73930) |
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CsPI (AF230710, p=AAF73939) |
Illiciaceae | Illicium parviflorum | IlpAP3 (AY337747)
IlpAP3.1 (AY936225) IlpAP3.2 (AY936226) IlpAP3.3 (AY936227) |
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IlpPI (AY936224) |
Laurales |
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Calycanthaceae |
Calycanthus floridus |
CfAP3-1 (AF230699, p=AAF73928), CfAP3-2 (AF230700, p=AAF73929) |
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CfPI-1 (AF230708, p=AAF73937), CfPI-2 (AF230709, p=AAF73938) |
Lauraceae |
Persea americana |
PeaAP3 (AY337748) |
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PeaPI (AY337738, p=AAR06672.1) |
Magnoliales |
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Annonaceae |
Asimina longifolia | AslAP3 (AY337749) | AslPI (AY337739) | ||
Eupomatiaceae |
Eupomatia bennettii | EubAP3-1 (AY337750)
EubAP3-2 (AY337751) |
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EubPI (AY337740) |
Eupomatia laurina |
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EulPI (AY337741) | ||
Magnoliaceae |
Liriodendron tulipifera |
LtAP3 (AF052878, p=AAC42593) |
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LtPI (AF052864, p=AAC42579) |
Magnolia grandiflora | MagAP3 (AY337752) |
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Magnolia praecocissima | MpMADS7 (AB050649) |
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MpMADS8 (AB050650) | |
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Michelia figo |
MfAP3 (AF052877, p=AAC42592) |
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MfPI (AF052863, p=AAC42578) |
Nymphaeales |
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Nymphaeaceae |
Nuphar advena |
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NuaPI (AY337736) |
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Nuphar variegatum |
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NuvPI (AY337737) |
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Piperales |
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Aristolochiaceae |
Asarum europaeum |
AeAP3-1 (AF230697, p=AAF73926), AeAP3-2 (AF230698, p=AAF73927) |
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AePI (AF230707, p=AAF73936) |
Piperaceae |
Peperomia hirta |
PhAP3 (AF052879, p=AAC42594) |
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PhPI (AF052865, p=AAC42580) |
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Piper magnificum |
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PmPI-1 (AF052866, p=AAC42581.1), PmPI-2 (AF052867, p=AAC42582) |
Saururaceae |
Saururus chinensis | MADS651 (AY057378) |
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Monocots |
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Alismatales |
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Alismataceae |
Sagittaria montevidensis |
SmAP3 (AF230705, p=AAF73934) |
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SmPI (AF230712, p=AAF73941) |
Asparagales |
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Hemerocalidaceae |
Hemerocallis hybrid cv. |
HhMADS1 (AF209729, p=AAG35773) |
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Hyacinthaceae |
Hyacinthus orientalis |
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HPI1 (AF134114, p=AAD22493), HPI2 (AF134115, p=AAD22494) |
Dioscoreales |
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Taccaceae |
Tacca chantieri |
TcAP3 (AF73935) |
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TcPI (AF73942) |
Poales |
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Poaceae |
Oryza sativa |
OsMADS16 (AF077760, p=AAD19872) |
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OsMADS2 (L37526, p=AAB52709), OsMADS4 (L37527) |
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Triticum aestivum |
TaMADS#51 (AB007506, p=BAA33459) |
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Zea mays |
SILKY-1 (AF181479, p=AAF59838) |
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Eudicots |
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Ranunculales |
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Fumariaceae |
Dicentra eximia |
DeAP3-1 (AF052875) |
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DePI (AF052857, p=AAC42572) |
Papaveraceae |
Papaver californicus |
PcAP3 (AF052872, p=AAC42587) |
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Papaver nudicaule |
PnAP3-1 (AF052873, p=AAC42588), PnAP3-2 (AF052874, p=AAC42589) |
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PnPI-2 (AF052856, p=AAC42571) |
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Sanguinaria canadensis |
ScAP3 (AF130868, p=AAD31696) |
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ScPI (AF130871, p=AAD31699) |
Ranunculaceae |
Delphinium ajacis |
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DaPI (AF052862, p=AAC42577) |
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Eranthis hyemalis |
EhAP3 (AY053362, p=AAL15150) |
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Ranunculus bulbosus |
RbAP3-1 (AF052876, p=AAC42591), RbAP3-2 (AF130869, p=AAD31697) |
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RbPI-1 (AF052859, p=AAC42574), RbPI-2 (AF052860, p=AAC42575) |
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Ranunculus ficaria |
RfAP3-1 (AF052854, p=AAC42569), RfAP3-2 (AF130870, p=AAD31698) |
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RfPI-1 (AF052858, p=AAC42573), RfPI-2 (AF130872, p=AAD31700) |
Proteales |
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Buxaceae |
Pachysandra terminalis |
PtAP3-1 (AF052870, p=AAC42585) |
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PtAP3-2 (AF052871, p=AAC42586) |
Caryophyllalles |
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Caryophyllaceae |
Dianthus caryophyllus |
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CMB2 (L40405, p=AAB05559) |
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Silene latifolia |
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SLM3 (X80490, p=CAA56657) |
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SLM2 (X80489) |
Polygonaceae |
Rumex acetosa |
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RAD1 (U28482, p=AAA80304), RAD2 (U28484, p=AAA80306) |
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Malpighales |
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Salicaceae |
Populus tremuloides |
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PTD (AF057708) |
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Cornales |
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Cornaceae |
Cornus alba |
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CoralbTM6 |
CoralbPI1, CoralbPIJ394 |
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Cornus florida |
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CorfloAP3c1, CorfloAP3c2 |
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CorfloPI |
Hydrangeaceae |
Hydrangea macrophylla |
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HmAP3 (AF230702, p=AAF73931) |
HmTM6 (AF230703, p=AAF73932) |
HmPI (AF230711, p=AAF73940) |
Cucurbitales |
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Cucurbitaceae |
Cucumis sativus |
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CUM26 (AF043255, AAD02250) |
Fabales |
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Fabaceae |
Medicgo sativa |
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NMH7 (L41727, p=AAB48660) |
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NGL9 (AF335473, p=AAK77938) |
Fagales |
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Juglandaceae |
Juglans regia |
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JrAP3 (AJ313089, p=CAC38765) |
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Rosales |
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Rosaceae |
Malus x domestica |
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MdPI (AJ291490, p=CAC28021) |
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Rosa rugosa |
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MASAKO B3 (AB055966, p=BAB63261) |
MASAKOBP (AB038462, p=BAB11939) |
Myrtales |
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Myrtaceae |
Eucalyptus grandis |
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EGM2 (AF029976, p=AAC78283) |
Brassicales |
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Brassicaceae |
Arabidopsis lyrata |
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AlAP3 (AF143380, p=AAF25590) |
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AlPI (AF143382, p=AAF25591) |
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Arabidopsis thaliana |
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AP3 (D21125) |
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PI (D30807) |
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Brassica napus |
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BnAP3 (AF124814, p=AAF28894) |
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Solanales |
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Solanaceae |
Lycopersion esculentum |
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LeAP3 (AF052868) |
TM6 (=TDR6, X60759) |
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Nicotiana tabacum |
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NTDEF (X96428, p=CAA65288) |
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NTGLO (X67959) |
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Petunia hybrida |
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PMADS1 (X69946, p=CAA49567) |
PhTM6 (AF230704) |
FBP1 (M91190), PMADS2 (X69947, p=CAA49586) |
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Solanum tuberosum |
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STDEF (=DEF4, X67511, p=CAA47846) |
PD2 (?) |
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Lamiales |
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Oleaceae |
Syringa vulgaris |
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SvAP3 (AF052869) |
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SvPI-1 (AF052861, p=AAC42576) |
Scrophulariaceae |
Antirrhinum majus |
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DEF (X62810) |
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GLO (x68831) |
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Mimulus guttatus |
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MgAP3 (AF381766, p=AAK68069) |
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Mimulus nasutus |
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MnAP3 (AF381767, p=AAK68070) |
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Asterales |
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Asteraceae |
Gerbera hybrida |
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GDEF2 (AJ009725, p=CAA08803) |
GDEF1 (AJ009724, p=CAA08802) |
GGLO1 (AJ009726, p=CAA08804) |
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Hieracium piloselloides |
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HPDEF1 (AF180364, p=AAD53325) HPDEF2 (AF180365, p=AAD53326) |
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