1. Fu, J.-F., J.-M. Hu, Y.-S. Chang, and S.-T. Liu. 1998. Isolation and characterization of plasmid pSW200 from Erwinia stewartii. Plasmid, 40: 100-112.
2. Lavin, M., E. Eshbaugh, J.-M. Hu, S. Mathews, and R. A. Sharrock. 1998. Monophyletic subgroups of the tribe Millettieae (Leguminosae) as revealed by phytochrome nucleotide sequence data. American Journal of Botany, 85(3): 412-433.
3. Wojciechowski, M., M. J. Sanderson, and J.-M. Hu. 1999. Evidence on the monophyly of Astragalus (Fabaceae) and its major subgroups based on nuclear ribosomal DNA ITS and chloroplast DNA trnL intron data. Systematic Botany, 24(3): 409-437.
4. Hu, J.-M.*, M. Lavin, M. Wojciechowski, and M. J. Sanderson. 2000. Phylogenetic systematics of the tribe Millettieae (Leguminosae) based on trnK/matK sequences, and its implications for the evolutionary patterns in Papilionoideae. American Journal of Botany 87(3): 418-430.
5. Sanderson, M. J., M. F. Wojciechowski, J.-M. Hu, T. Sher Khan, and S. G. Brady. 2000. Error, bias and long branch attraction in data for two chloroplast photosystem genes in seed plants. Molecular Biology and Evolution 17(5): 782-797.
6. Pennington, T., M. Lavin, H. Ireland, B. Klitgaard, J. Preston, and J.-M. Hu. 2001. Phylogenetic relationships of basal papilionoid legumes based on sequences of the chloroplast trnL intron. Systematic Botany 26(3): 537-556.
7. Hu, J.-M.*, M. Lavin, M. F. Wojciechowski, and M. J. Sanderson. 2002. Phylogenetic analysis of nuclear ribosomal ITS/5.8S sequences in the tribe Millettieae (Fabaceae): Poecilanthe-Cyclolobium, the core Millettieae, and the Callerya group. Systematic Botany 27(4): 722-733.
8. Hu, J.-M.* and Chang S.-P. 2003. Two new members of the Callerya group (Fabaceae) based on phylogenetic analysis of rbcL sequences: Endosamara racemosa (Roxb.) Geesink and Callerya vasta (Kosterm.) Schot. Taiwania 48(2): 118-128.
9. Chuang, S.-L. and Hu, J.-M.* 2004. The evolution of chloroplast matK genes, including identification of new homologues from Ophioglossum petiolatum and two lycophytes. Taiwania 49(4): 273-291.
10. Kramer, E. M.*, H.-J. Su, C.-C. Wu, and J.-M. Hu. 2006. A simplified explanation for the frameshift mutation that created a novel C-terminal motif in the APETALA3 gene lineage. BMC Evolutionary Biology 6: 30.
11. Hu, J.-M.*, H.-C. Fu, C.-H. Lin, H.-J. Su, and H.-H. Yeh. 2007. Reassortment and concerted evolution in banana bunchy top virus genome. Journal of Virology 81: 1746-1761.
12. Wu, H.-C., H.-J. Su, and J.-M. Hu*. 2007. The identification of A-, B-, C-, and E-class MADS-box genes and implications for perianth evolution in the basal eudicot Trochodendron aralioides (Trochodendraceae). International Journal of Plant Sciences 168: 775-799.
13. Yang, W.-C., L.-S. Chou, and J.-M. Hu*. 2007. Molecular characterization of major histocompatibility complex class II DQB and DRB genes in bottleneck dolphins (Tursiops truncatus and T. aduncus) from the Western Pacific. Zoological Studies 46: 664-679.
14. Chang, C.-S., Y.-H. Li, L.-T. Chen, W.-C. Chen, W.-P. Hsieh, J. Shin, W.-N. Jane, S.-J. Chou, G. Choi, J.-M. Hu, S. Somerville, S.-H. Wu*. 2008. LZF1, a HY5-regulated transcriptional factor, functions in Arabidopsis de-etiolation. Plant Journal 54: 205-219.
15. Yang, W.-C., J.-M. Hu*, and L.-S. Chou*. 2008. Sequence variation of MHC Class II DQB gene in bottlenose dolphin (Tursiops truncatus) from Taiwanese waters. Taiwania 53: 42-50.
16. Tseng, Y.-H., C.-F. Hsieh, and J.-M. Hu*. 2008. Incidences and ecological correlates of dioecious angiosperms in Taiwan and its outlying Orchid Island. Botanical Studies 49: 261-276.
17. Fu, H.-C., J.-M. Hu, T.-H. Hung, H.-J. Su, and H.-H. Yeh*. 2009. Unusual events involved in Banana bunchy top virus strain evolution. Phytopathology 99: 812-822.
18. Huang, J.-Y. and J.-M. Hu*. 2009. Revision of Rubus (Rosaceae) in Taiwan. Taiwania 54: 285-310.
19. Yang, W.-C., J.-M. Hu,
and L.-S. Chou*. 2010. Phylogenetic analyses of MHC class II genes in
bottlenose dolphins and their terrestrial relatives reveal
pathogen-driven directional selection. Zoological Studies 49:
132-151.
20. Pan, Z.-J., C.-C. Cheng, W.-C. Tsai, M.-C. Chung, W.-H. Chen, J.-M. Hu*, and H.-H. Chen*. 2011. The duplicated B-class MADS-box genes display dualistic characters in orchid floral organ identity and growth. Plant Cell Physiology 52: 1515-1531.
21. Wang, Y.-C. and J.-M. Hu*. 2011. Cryptic dioecy of Symplocos wikstroemiifolia Hayata (Symplocaceae) in Taiwan. Botanical Studies 52: 479-491.
22. Su, H.-J., J. Murata, and J.-M. Hu*. 2012. Morphology and phylogenetics of two holoparasitic plants, Balanophora japonica and Balanophora yakushimensis (Balanophoraceae), and their hosts in Taiwan and Japan. Journal of Plant Research 125: 317-326.
23. Su, H.-J. and J.-M. Hu*. 2012. Rate heterogeneity in six protein-coding genes from the holoparasite Balanophora (Balanophoraceae) and other Santalales taxa. Annals of Botany 110: 1137-1147.
24. Yang, W.-C., J.-M. Hu*, and L.-S. Chou*. 2013. Sequence analyses of MHC Class II DQB gene in bottlenose dolphins (Tursiops spp.) and the other delphinid species from the western Pacific. Taiwan Veterinary Journal 39(2): 100-109.
25. Ku, C., J.-M. Hu, and C.-H. Kuo*. 2013. Complete plastid genome sequence of the basal Asterid Ardisia polysticta Miq. and comparative analyses of Asterid plastid genomes. PLoS ONE 8(4): e62548.
26. Shyu, S.-Y. and J.-M. Hu*. 2013. Comparison of six DNA extraction procedures and the application of plastid DNA isolation methods in non-photosynthetic plants. Taiwania 58(4): 268-274.
27. Ku, C. and J.-M. Hu*. 2013. Phylogenetic and cophylogenetic analyses of the leaf-nodule symbiosis in Ardisia subgenus Crispardisia (Myrsinaceae): evidence from nuclear and chloroplast markers and bacterial rrn operons. International Journal of Plant Science 157(1): 92-109.
28. Tseng, Y.-H. and J.-M. Hu*. 2014. A new hybrid from Taiwan, Elatostema xhybrida (Urticaceae), is the first confirmed natural hybrid for Urticaceae. Phytotaxa 161(1): 43-60.
31. Tseng, Y. H. and J.-M. Hu*. 2015. Taxonomic revision of Elatostema J. R. Forst. & G. Forst. (Urticaceae) in Taiwan. Taiwania 60: 23-32.
33. Lo, J.-C., Y.-C. Lo, M. Tsednee, S.-C. Yang, J.-M. Hu, K. Ishizaki, T. Kohchi, D.-C. Lee, and K.-C. Yeh. 2016. Evolution analysis of Fe acquisition system in Marchantia polymorpha. New Phytologist 211(2): 569-583.
34. Su, H.-J. and J.-M. Hu. 2016. The complete chloroplast genome of hemiparasitic flowering plant Schoepfia jasminodora. Mitochondrial DNA Part B 1: 767-769.
鄭淑芬、林怡蓉、胡哲明、溫媺純、林雨德。2014。大學博物館行動展示盒之發展與教案之設計。「想的與跳的：博物館中的教與學及其超越」學術研討會。國立臺灣博物館出版。
胡哲明。2013。華萊士和達爾文的交錯人生。In 丁宗蘇等著，華萊士－ 一個科學與人文的先行者。國立臺灣博物館出版。
胡哲明。2013。第9章，生殖系統。In 邱文良、蔣鎮宇等編，植物系統分類學。
胡哲明。2013。第5章，系統分類學原理及方法。In 邱文良、蔣鎮宇等編，植物系統分類學。
Yang, W.-C., L.-S. Chou, and J.-M. Hu. 2012. Sequence analysis of MHC class II genes in Cetaceans. In: Abdel-Salam (ed.), Histocompatibility. pp. 117-132.
Hu, J.-M. and H.-H. Yeh. 2011. Babuvirus. In C. Tidona and G. Darai (eds.), The Springer index of viruses. Springer, New York.
胡哲明。2009。演化論被遺忘的推手－華萊士。達爾文200。90-101頁。
丁詩同，胡哲明等編著。2007。生物科技與遺傳教學研究網路資源。國立臺灣大學生物技術研究中心。
Hu, J.-M. 2000. Molecular systematics of the tribe Millettieae (Leguminosae). Ph.D. dissertation, University of California, Davis.
Hu, J.-M. 2000. The phylogenetic relationships of the tribe Millettieae -- the current status. In: A. Bruneau and P. Herendeen (eds), Advance in Legume Systematics, vol. 9: 299-310.
1. Hu, J.-M., N. M. Maturen, R. Krogh, and M. W. Frohlich. 2001. Studies of evolution and development of petaloid bracts in dogwoods (Cornus). Botany 2001 - "Plants and people", Annual meeting of Botanical Society of America (Albuquerque, New Mexico, USA). (poster)
2. Hu, J.-M. 2001. Studies of evolution and development of petaloid bracts in dogwoods (Cornus). Molecular Evolution and Molecular Systematics symposium (Taipei, Taiwan). (symposium speaker)
3. 莊樹嵐、胡哲明。2003。原始陸生植物葉綠體matK基因的演化。中華植物學會植物生長與發育研討會。(海 報)
4. 黃佳茵、胡哲明。2003。台灣鐵線蓮屬(毛茛科)植物分子親緣關係之探討。中華植物學會植物生長與發育研討會。(海報)
5. 呂佳穎*、胡哲明。2003。玉葉金花類花瓣構造之基因調控研究。中華植物學會植物生長與發育研討會。(*symposium speaker)
6. Su, H.-J.* and J.-M. Hu. 2003. Studies of evolution of floral B-class genes in basal eudicots。中華植物學會植物生長與發育研討會。(*symposium speaker)
7. Hu, J.-M. 2004. Petaloidy and expression of petal identity genes in Mussaenda pubescens (Rubiaceae). Botany 2004, alpine diversity: adapted to the peaks. Annual meeting of Botanical Society of America (Salt Lake City, UT, USA). (symposium speaker)
8. Su, H.-J. and J.-M. Hu. 2004. Studies of evolution of floral B-class genes in basal core eudicots. Annual meeting of Botanical Society of America (Salt Lake City, UT, USA).
9. Hu, J.-M. 2004. Using cDNA sequences for phylogenetic analysis. 植物多樣性與保育遺傳學多樣性研討會 (台北，台灣)。(symposium speaker)
10. Su, H.-J. and J.-M. Hu*. 2004. Gene duplication and genetic diversity: example from floral identity genes of flowering plants. 生物多樣性在農業生技產業發展之國際學術研討會 (屏東，台灣)。(*symposium speaker)
11. 徐馨怡*、胡哲明。2004。非光合作用被子植物質體基因研究。生物多樣 性在農業生技產業發展之國際學術研討會 (屏東，台灣)。(論文發表)
12. Wu, H.-C. and J.-M. Hu. 2004. Expression pattern of floral organ identity genes in Trochodendron aralioides. 生物多樣性在農業生技產業發展之國際學術研討會 (屏東，台灣)。(海報)
13. 蔡依倫、胡哲明。2004。山珊瑚核及質體基因序列分析。生物多樣性在農業生技產業發展之國際學術研討會 (屏東，台灣)。(海報)
14. Wu, H.-C., S.-L. Chuang, and J.-M. Hu. 2005. Extracting evolutionary signals using corresponding analysis of codon usage from selected chloroplast genes. Symposium of Theoretical Ecology and Evolutionary Biology. Yang-Ming University.(海報)
15. Maturen, N., J.-M. Hu, and M. Frohlich. 2005. Petal organ-identity genes are expressed in the petaloid bracts of dogwoods. International Botanical Congress, Vienna.(海報)
16. Huang, N.-L. and J.-M. Hu. 2005. Evolution of floral organ identity genes in Buxus microphylla ssp. sinica. 中華植物學會.(海報)
17. Wu, H.-C., H.-J. Su, and J.-M. Hu*. 2006. The identification of A-, B-, C-, and E-class MADS homologues and the implication of perianth evolution in Trochodendron aralioides (Trochodendraceae). Botany 2006, Annual meeting of Botanical Society of America (Chico, CA, USA). (*symposium speaker)
18. Tseng, Y.-H., Y.-W. Gan, and J.-M. Hu. 2006. Identification of ORF-162 homologues from four liverworts in Taiwan. Botany 2006, Annual meeting of Botanical Society of America (Chico, CA, USA).(海報)
19. Shyu, S.-Y. and J.-M. Hu. 2006. Studies of plastid 16S rDNA suggest that the evolutionary rates vary among nonphotosynthetic plants. Botany 2006, Annual meeting of Botanical Society of America (Chico, CA, USA).(海報)
20. 胡哲明。2007。從昆欄樹談真雙子葉植物花被的演化。臺灣植物多樣性研究現況與前瞻研討會﹣基因與生態演化。pp. 41-48。(論文發表；中文)
21. Su, H.-J. and J.-M. Hu. 2008. Phylogenetic relationships of Balanophoraceae and Santalales based on floral B homeotic genes. Botany 2008, Annual meeting of Botanical Society of America (Vancouver, Canada).(海報)
22. Hu, J.-M. How to compete in the Asian market? - What Asian students want? European Association of International Education. Antwerp, Belgium. (9/12)
23. Hu, J.-M. 2009. Petaloidy and floral organ identity genes in Hydrangea chinensis (Hydrangeaceae). Botany & Mycology 2009. Snowbird, Utah. (7/29)
24. Hu, J.-M. 2009. MADS about flowers - evo-devo studies on floral organ formation. The 10th Developmental Biology Retreat. Fo Guang University. (8/14)
25. Ku, C.* and J.-M. Hu. 2010. Identification of Ardisia (Myrsinaceae) leaf-nodule endosymbionts and cophylogenetic analyses of plant-bacteria symbiosis. 第二十七屆中華植物學會年會前瞻植物生物科技研討會暨蘭花生物科技研討及產學交流會 (南投，台灣). (海報及論文宣讀)(*宣讀論文獎)
26. Hu, J.-M., J.-C. Chen, and H.-L. Chang. 2010. Short-term program: what Taiwan can offer, what students can get. NAFSA, Kansas City.
27. Ku, C.* and J.-M. Hu. 2010. Identification of Ardisia (Myrsinaceae) leaf-nodule
endosymbionts and cophylogenetic analyses of plant-bacteria symbiosis.
第二十七屆中華植物學會年會前瞻植物生物科技研討會暨蘭花生物科技研討及產學交流會 (南投，台灣). (海報及論文宣讀)(*宣讀論文獎)
28. Su, H.-J. and J.-M. Hu. 2011. Rate variation and expression of floral B-class genes in holoparasitic Balanophora (Balanophoraceae). Penn State Plant Biology Symposium (5/18).
29. Su, H.-J. and J.-M. Hu 2011. Morphologies and phylogenetics of two holoparasitic plants, Balanophora japonica and Balanophora yakushimensis (Balanophoraceae), and their hosts in Taiwan and Japan. NTU-NTNU jointed symposium on Ecology and Evolution.
30. Su, H.-J. and J.-M. Hu. 2011. Rate variation and expression of floral B-class genes in holoparasitic Balanophora (Balanophoraceae). NTU-NTNU jointed symposium on Ecology and Evolution.
31. Kung, H.-H. and J.-M. Hu 2011. Population genetics of Fagus hayatae Palib. ex Hayata based on chloroplast and nuclear microsatellite markers. NTU-NTNU jointed symposium on Ecology and Evolution.
32. Shyu, S.-Y. and J.-M. Hu. 2011. High evolutionary rate of 18S and 16S rDNA is not a ubiquitous phenomenon in hetertrophic plants. NTU-NTNU jointed symposium on Ecology and Evolution.
33. Tseng, Y.-H. and J.-M. Hu. 2011. Elatostema x hybrida, the first hybrid in Urticaceae of the world. NTU-NTNU jointed symposium on Ecology and Evolution.
34. Su, H.-J. and J.-M. Hu. 2011. Evolutionary rate heterogeneity in the genome of holoparasitic plant Balanophora laxiflora (Balanophoraceae). 2011 Annual meeting of SMBE, Kyoto.
35. Su, H.-J., Y.-C. Hsieh, and J.-M. Hu. 2011. Genetic tools for
re-examining the classification and phylogenetic relationships of
Balanophora (Balanophoraceae). Philippine Native Plants Conservation
Society Inc. (PNPCSI) First International Symposium (11/19). (talk)
36. Tseng, Y.-H. and J.-M. Hu. 2012. Molecular phylogeny of Elatostema sensu lato based on sequences of nuclear ITS and chloroplast trnH-psbA spacer. Botany 2012. Annual meeting of Botanical Society of America, Columbus, Ohio, USA. (poster)
37. Lin, Y.-J., S.-F. Cheng, J.-M. Hu, M. L. Wen, Y.-T. Lin. 2012. Developing loan boxes of university museum and the teaching lesson plans. 43rd Annual ASERA Conference. University of the Sunshine Coast, Australia. (poster)
38. 鄭淑芬、林怡蓉、胡哲明、溫媺純、林雨德。2012。大學博物館行動展示盒之發展與教案之設計。「想的與跳的：博物館中的教與學及其超越」學術研討會。國立臺灣博物館主辦。國立臺北藝術大學國際會議廳。(Full paper)
39. Hu, J.-M., S.-F. Cheng, Y.-J. Lin, M. L. Wen, and Y.-T. K. Lin. 2013. University museum outreach to school: a case study of two loan boxes. The 3rd Biennial Conference of East-Asian Association for Science Education. Hong Kong. (talk)
40. Shyu, S.-Y. and J.-M. Hu. 2013. Complete plastid genome sequence of the non-photosynthetic plant Mitrastemon kanehirai. Plant Biology 2013. Rhode Island, USA. (poster)
41. Liu, C.-C., J.-M. Hu, and M.-J. Wu. 2013. Phylogeny of Phyllanthus subsection Urinaria (Phyllanthaceae, Euphorbiaceae sensu lato). Philippine Native Plants Conservation Society Inc. (PNPCSI) Second International Symposium. (poster)
42. Tseng, Y. H. and J. M. Hu. 2013. Is there any obligate apomixis in plants? A case study in Elatostema (Urticaceae). 9th International Flora of Malesiana Symposium (Bogor, Indonesia).
43. Hu, J.-M., S.-F. Cheng, Y.-J. Lin, M. L. Wen, and Y.-T. K. Lin. 2014. University museum outreach to school: a case study of two loan boxes. APRU Research Symposium on University Museums 2014 at NTU. Taipei, Taiwan. (talk)
44. Hu, J.-M. 2014. Accessing species distribution patterns for the flora of Taiwan based on various databases. NTU-Kyoto University Joint symposium. Kyoto, Japan. (talk)
45. Hu, J.-M. 2014. Phylogenetics and molecular evolutionary characteristics of Balanophora, a non-photosynthetic flowering plant. NTU-Kyoto University Joint symposium. Kyoto, Japan. (talk)
46. Cheng, Y.-R. and J.-M. Hu. 2014. Plant exploration in the pacific islands during Taihoku Imperial University period (1928-1945) based on herbarium data. The 2nd International History, Philosophy and Science Teaching, Asian Regional Conference, Taipei, Taiwan. (poster)
47. Lo, S.-M. and J.-M. Hu. 2014. Knowledge and practices of wild
edible plants of the Amis of 'Tolan: contents and social distribution
of a locally-bound traditional ecological knowledge system. Pacific
History Association 21st Biennial Conference. (talk)
48. Tseng, Y. H. and J.-M. Hu. 2014. A case of obligate apomixis in Elatostema (Urticaceae). International symposium on plant reproduction (Taipei, Taiwan).
49. Cheng, S.-F., J.-M. Hu, Y.-J. Lin, Z. Chen, M. L. Wen, and Y.-T. K. Lin. 2015. Changes of teaching and learning by using loan box in classrooms. The 46th Annual ASERA (Australasian Science Education Research Association) Conference. Perth, Australia. (talk, presented by S.-F. Chen)
50. Chao, W.-C., J.-M. Hu, C.-F. Hsieh, and H.-Y. Lin. 2015. Assessing species richness, endemism and phytogeographical affinities of Taiwan based on an integrated vascular plant distribution database. 58th Annual Symposium of the International Association for Vegetation Science: Understanding broad-scale vegetation patterns. Brno, Czech Republic. (poster)
51. Cheng, Y.-R. and J.-M. Hu. 2015. Plant exploration in the pacific islands during Taihoku Imperial University period (1928-1945) based on herbarium data. Botanical Society of America. Edmonton, Canada. (poster)
52. Lin, H. -Y., Y.-H. Tseng, and J.-M. Hu. 2015. Examining dioecy and the associated ecological correlates in the flora of Taiwan based on an integrated plant distribution database. Botanical Society of America. Edmonton, Canada. (poster)
53. Y.-C. Hsieh, S.-P. Chang, H.-J. Su, and J.-M. Hu. 2015. Evolution of agamospermy and the host specificity of Balanophora laxiflora and allied taxa (Balanophoraceae). Botany 2015. Botanical Society of America. Edmonton, Canada. (talk)
54. 謝傳鎧，胡哲明。2015。貢寮水梯田農民傳統生態知識的變遷：以水稻農作中的水資源管理為例。臺灣人類學與民族學學會(TSAE)暨東亞人類學學會(EAAA)2015聯合年會：多重地景的人類學。政治大學，台北。
55. Liu, S.-Y., K.-H. Wang, and J.-M. Hu. 2015. The role of TAI
herbarium and its collections in studying the history of botanical
research in Taiwan. International Council of Museums Committee for
Museums and Collections of Natural History (ICOM NATHIST), Taipei,
Taiwan.
胡哲明，呂佳穎。2005。花非花，葉非葉。In 謝豐舟等編著，從基因體科學到基因體醫學，245-249頁。力大圖書，台北。
丁詩同，胡哲明等編著。2007。生物科技與遺傳教學研究網路資源。國立臺灣大學生物技術研究中心。
黃俊溢，胡哲明。2009。花瓣不張開的懸鉤子。科學人86: 110-111。
胡哲明。2009。重現侏儸紀公園:演化學家的綺夢還是惡夢？。台灣博物28(1): 22-25。
胡哲明。2009。花園裡的心機－植物的性別與演化。科學月刊477: 688-693。
胡哲明。2010。花的極限－最大v.s.最小。科學月刊490: 744-749。
黃俊溢、胡哲明。2010。真真假假的雄蕊。科學月刊490: 762-764。
胡哲明。2012。腳邊的綠色小雨傘－臺灣常見的地錢類植物。國家公園季刊2012.06: 89-91。
胡哲明。2014。花園裡的誘惑與機心。臺灣博物季刊122(33): 6-11。1999:
(1) Hu, J.-M., M. Lavin, A. Delgado, H. Ohashi, T. Kajita, and J. J. Doyle. 1999. Paraphyly, polyphyly, and the radiation of tropical papilionoid tribes: Millettieae, Phaseoleae, and allies. (International Botanical Congress XVI, St. Louis, MO, USA) (Symposium speaker).
2001:
(1) Hu, J.-M. Systematics of legumes and the trends of plant taxonomic systems. Providence University.
(2) Hu, J.-M. Studies of evolution and development of petaloid bracts in dogwoods (Cornus). Molecular Evolution and Molecular Systematics symposium (台北，台灣)。
(3) 胡哲明。分子生物學在植物系統學的應用與前瞻。台灣大學。（黃增泉老師榮退紀念演講）
(4) 胡哲明。四照花屬類花瓣苞片的發育與演化研究。台灣大學；師範大學。
2002:
(1) Hu, J.-M. Molecular phylogeny and character evolution of the tribe Millettieae (Leguminosae). Institute of Botany, Academia Sinica (台北，台灣)。
(2) 胡哲明。Studies of evolution and development of petaloid bracts in dogwoods (Cornus)。第十八屆生物夏令營。
(3) 胡哲明。Studies of evolution and development of petaloid bracts in dogwoods (Cornus)。南台科技大學。
(4) 胡哲明。豆科崖豆族（Millettieae）的分子系統分類研究。高雄醫學大學。
2004:
(1) Hu, J.-M. Petaloidy and expression of petal identity genes in Mussaenda pubescens (Rubiaceae). Botany 2004, alpine diversity: adapted to the peaks (Salt Lake City, UT, USA).
(2) Hu, J.-M. Using cDNA sequences for phylogenetic analysis. 植物多樣性與保育遺傳學多樣性研討會 (台北，台灣)。
(3) Su, H.-J. and J.-M. Hu. Gene duplication and genetic diversity: example from floral identity genes of flowering plants. 生物多樣性在農業生技產業發展之國際學術研討會 (屏東，台灣)。
(4) 胡哲明，呂佳穎。花非花，葉非葉：花部器官的決定。東海大學。
(5) 胡哲明，呂佳穎。花非花，葉非葉：The transformation of floral organ identity in plants。台灣大學。
(6) 胡哲明。演化生物學研究。高中生物夏令營，台灣大學生科系主辦。2005:
(1) 胡哲明。植物的演化與多樣性。自然步道協會。
2006:
(1) 胡哲明。生物的多樣性。高中生物夏令營，台灣大學生科系主辦。
(2) 胡哲明。植物多樣性與演化。花蓮教育大學中學老師研習營。
(3) Hu, J.-M. Transference of function. 生物夏令營,花蓮布洛灣。
(4) Hu, J.-M. Gene duplication and evolution of floral organ identity genes in eudicots. Institute of Cellular and Organismic Biology, Academia Sinica (台北，台灣)。(10/17)
(5) 胡哲明。植物的生殖策略。花蓮教育大學。(10/24)
(6) 胡哲明。分子 - 演化: 分子工具在演化生物學的應用。台北市麗山高中。(11/1)
(7) 胡哲明。植物的性別與生殖策略。台灣大學生科系。(11/8)
2007:
(1) Hu, J.-M. Perianth evolution of Trochodendron aralioides: reduction and transference of function for petals? Institute of Plant and Microbial Biology, Academia Sinica (台北，台灣)。(1/17)
(2) 胡哲明。植物的生殖策略。麗山高中。(3/27)
(3) Hu, J.-M. Codon usage in chloroplast genome: extracting evolutionary information using multivariate analysis. Daniel Hartl Minisymposium. (11/5)
2008:
(1) 胡哲明。植物的性別。建國中學 (台北，台灣)。(2/4)
(2) Hu, J.-M. The timing of frameshift mutation on floral homeotic genes. 師範大學生命科學系. (3/27)
(3) 胡哲明。科學寫作。台大生科系 (台北，台灣)。(4/26)
(4) 胡哲明。兔尾，相思，山螞蝗﹣豆豆的異想世界。台灣植物分類學會。(6/20)
2009:
(1) 胡哲明。跟著植物去旅行。中研附幼。(1/14)
(2) 胡哲明。從各從其類到分群相錯－生物演化與分類的藝術。「週末Let's go」系列演講。國立自然科學博物館。(5/8)
(3) 胡哲明。2009。演化論被遺忘的另一推手－生物地理學家華萊士。達爾文誕辰二百週年系列講座－演化之旅。台北科教館。(8/18)
2010:
(1) Hu, J.-M. On the evolution of genetic basis of petal identity. 成大熱植所 (4/13)
(2) Hu, J.-M. The roles and efforts of knowledge transfer in
Taiwan's universities. 2010 ASAIHL meeting. Taipei. (4/16)
(3) Hu, J.-M. The evolution of floral homeotic genes in regards of perianth formation. Exeter University, UK. (4/27)
(4) 胡哲明。花園裡的心機－談植物的性與性別。(5/4)2011:
(1) Hu, J.-M. Bizarre from inside out: studies on the parasitic plant Balanophora (Balanophoraceae). Harvard University Herbarium seminar. (3/8)
2013:
(1) 胡哲明。2013。演化論源起－華萊士與達爾文糾結交錯的人生。「科學界的恆星－紀念華萊士逝世百年」系列講座。國立自然科學博物館。
(2) 胡哲明。2013。我的學思之旅。科學到民間－2013知識列車。國立彰化高級中學。
胡哲明。2015。花園裡的私密情事－談植物的傳宗接代。科學到民間系列演講。台北市立圖書館舊莊分館。
[EMAIL: jmhu@ntu.edu.tw]