Professor

my Love and me

Fascinating nature, my love and me

 

Chih-hao Hsieh (Zac)

I am interested in statistics/theoretical ecology/zooplankton ecology/biological oceanography/fisheries.

I like simple ideas that have far-reaching implications and applications.

I am open to any cooperation, even beyond aquatic science, even beyond ecology.

 

Professional employment

2014-present         Professor, Institute of Oceanography and Institute of Ecology and Evolutionary Biology, National Taiwan University 

2011-2014            Associate professor, Institute of Oceanography and Institute of Ecology and Evolutionary Biology, National Taiwan University    

2007-2008            Assistant professor, Institute of Oceanography and Institute of Ecology and Evolutionary Biology, National Taiwan University    

2007-2008            Assistant professor, Institute of Oceanography, National Taiwan University

2006-2007            Postdoctoral research fellow, Center of Ecology Research, Kyoto University, Japan

 

Education

2001-2006            Ph.D. (Biological Oceanography), Scripps Institution of Oceanography, University of California-San Diego, USA

1999-2001            M.Sc. (Zoology), National Taiwan University, Taipei, Taiwan

1993-1997            B.Sc. (Zoology), National Taiwan University, Taipei, Taiwan

 

Publications

Chen, C. C., G. C. Gong, W. C. Chou, C. C. Chung, C. H. Hsieh, F. K. Shiah, and K. P. Chiang. (in press). The influence of episodic flooding on pelagic ecosystem in the East China Sea. Biogeosciences.

Chang, C. W., M. Ushio, and C. H. Hsieh (in press) Empirical Dynamic Modeling for beginners. Ecological Research.

Wong, E., A. R. Sastri, F. S. Lin, and C. H. Hsieh (2017) Modified FlowCAM procedure for quantifying size distribution of zooplankton with sample recycling capacity. PloS ONE 12: e0175235. http://dx.doi.org/10.1371%2Fjournal.pone.0175235

Dakos, V., S. M. Glaser, C. H. Hsieh, and G. Sugihara (2017) Elevated nonlinearity as an indicator of shifts in the dynamics of populations under stress. Journal of the Royal Society Interface. 14: 20160845. https://doi.org/10.1098/rsif.2016.0845

Wu, W., R. Logares, B. Huang and C. H. Hsieh (2017) Abundant and rare picoeukaryotic sub-communities present contrasting patterns in marginal seas of the northwestern Pacific Ocean. Environmental Microbiology. 19: 287-300. http://dx.doi.org/10.1111/1462-2920.13606

Chen, T. Y., C. K. Liao, Y. Kobayashi, J. H. Tai, C. Y. Ko, S. C. Hsu, N. Jiao, H. B., Liu, C. C. Chen, M. F. Chow, C. H. Hsieh, and F. K. Shiah (2016) Nutrient pulses driven by internal solitary waves enhance heterotrophic bacterial growth in the South China Sea. Environmental Microbiology. doi: 10.1111/1462-2920.13273

Tsai, C. H., C. H. Hsieh, and T. Nakazawa (2016) Predator-prey mass ratio revisited: Does preference of relative prey body size depend on predator body size? Functional Ecology. DOI: 10.1111/1365-2435.12680

Lu, H. P., Y. C. Yeh, A. Sastri, F. K. Shiah, G. C. Gong, and C. H. Hsieh (2016) Evaluating community-environment relationships along fine to broad taxonomic resolutions reveals evolutionary forces underlying community assembly. ISME Journal. doi:10.1038/ismej.2016.78

Ho, P. C., N. Okuda, T. Miki, M. Itoh, F. K. Shiah, C. W. Chang, S. S. Hsiao, S. J. Kao, M. Fujibayashi, and C. H. Hsieh (2016). Summer profundal hypoxia determines the coupling of methanotrophic production and the pelagic food web in a subtropical reservoir. Freshwater Biology. 61: 1694-1706. http://onlinelibrary.wiley.com/doi/10.1111/fwb.12809/full#references

García-Comas, C., Y. C. Lee, C. Y. Chang, G. C. Gong and C. H. Hsieh (2016) Comparison of copepod species-based and individual-size-based community structuring. Journal of Plankton Research. 38: 1006-1020. http://plankt.oxfordjournals.org/content/38/4/1006

García-Comas, C., A. R. Sastri, L. Ye, C. Y. Chang, F. S. Lin, G. C. Gong, and C. H. Hsieh (2016) Predator size diversity promotes biomass trophic transfer and prey size diversity hinders it in planktonic communities. Proceedings of the Royal Society of London, Series B. 283: 20152129. DOI: 10.1098/rspb.2015.2129

Kuo, T. C., S. Mandal, A. Yamauchi, and C. H. Hsieh (2016) Life history traits and exploitation affect the spatial mean-variance relationship in fish abundance. Ecology. http://www.esajournals.org/doi/abs/10.1890/15-1270.1

Tsai, C. H., Y. C. Lin, T. Wiegand, T. Nakazawa, S. H. Su, C. H. Hsieh, and, T. S. Ding (in press) Individual species-area relationship of woody plant communities in a subtropical monsoon rainforest. PLoS ONE. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0124539

Ye, H., R. J. Beamish, S. M. Glaser, S. C. H. Grant, C. H. Hsieh, L. J. Richards, J. T. Schnute, and G. Sugihara (2015) Equation-free mechanistic ecosystem forecasting using empirical dynamic modeling. Proceedings of the National Academy of Sciences, USA. 112: E1569–E1576. http://www.pnas.org/content/112/13/E1569

Tu, C. Y. Y. Tian, and C. H. Hsieh (2015) Climate effects on temporal variation in abundance and distribution of the demersal fish assemblage in the Tsushima Warm Current region of the Japan Sea. Fisheries Oceanography. 14: 177-189. http://onlinelibrary.wiley.com/doi/10.1111/fog.12101/abstract

Yeh Y. C., P. Peres-Neto, S. W. Huang, Y. C. Lai, C. Y. Tu, F. K. Shiah, G. C. Gong, and C. H. Hsieh (2015) Determinism of bacteria metacommunity dynamics in the southern East China Sea varies depending on hydrography. Ecography. 38: 198-212. http://onlinelibrary.wiley.com/doi/10.1111/ecog.00986/abstract

Bai, M. L., F. S. Ling, Y. C. Lee, G. C. Gong, and C. H. Hsieh (2015) Trophic structure of the pelagic food web in the East China Sea. Zoological Studies. 54: 7. http://www.zoologicalstudies.com/content/54/1/7

Lu, H. P., Y. C. Lai, S. W. Huang, H. C. Chen, C. H. Hsieh, and H. T. Yu (2014) Spatial heterogeneity of gut microbiota reveals multiple bacterial communities with distinct characteristics. Scientific Reports. 4: 6185. http://www.nature.com/srep/2014/140826/srep06185/full/srep06185.html

Tsai, C. H., T. Miki, C. W. Chang, K. Ishikawa, S. Ichise, M. Kumagai, and C. H. Hsieh (2014) Phytoplankton functional group dynamics explain species abundance distribution in a directionally changing environment. Ecology. 95: 3335-3343. http://www.esajournals.org/doi/abs/10.1890/13-1946.1

Chang, N.N., J. C. Shiao, G. C. Gong, S. J. Kao, and C. H. Hsieh (2014) Stable isotope ratios reveal food source of benthic fish and crustaceans along a gradient of trophic status in the East China Sea. Continental Shelf Research. 84: 23-34. http://www.sciencedirect.com/science/article/pii/S0278434314001460

Chang C. W., T. Miki, F. K. Shiah, S. J. Kao, J. T. Wu, A. R. Sastri, and C. H. Hsieh (2014) Linking secondary structure of individual size distribution with nonlinear size-trophic level relationship in food webs. Ecology. 95: 897-909. http://dx.doi.org/10.1890/13-0742.1

García-Comas, C., C.Y. Chang, L. Ye, Y. C. Lee, G. C. Gong, and C. H. Hsieh (2014) Mesozooplankton size structure in response to environmental conditions in the East China Sea: How much does size spectra theory fit empirical data of a dynamic coastal area? Progress in Oceanography. 121: 141-157. http://www.sciencedirect.com/science/article/pii/S0079661113001961

Chang C. W., F. K. Shiah, J. T. Wu, T. Miki, and C. H. Hsieh (2014) Seasonal succession of zooplankton community linking to the environmental and phytoplankton dynamics in Feitsui Reservoir, northern Taiwan. Limnologica 46: 131-138. http://www.sciencedirect.com/science/article/pii/S007595111400005X

Glaser, S. M., M. J. Fogarty, H. Liu, I. Altman, C. H. Hsieh, L. Kaufman, A. D. MacCall, A. A. Rosenberg, H. Ye, G. Sugihara (2014) Dynamic complexity may limit prediction in marine fisheries. Fish and Fisheries 15: 616-633. http://onlinelibrary.wiley.com/doi/10.1111/faf.12037/abstract

Liu, H., M. J. Fogarty, J. A. Hare, C. H. Hsieh, S. M. Glaser, H. Ye, E. Deyle, and G. Sugihara (2014) Modeling dynamic interactions and coherence between marine zooplankton and fishes linked to environmental variability. Journal of Marine Systems. 131: 120-129. http://www.sciencedirect.com/science/article/pii/S0924796313003059

Ye, L., C. Y. Chang, C. García-Comas, G. C. Gong, and C. H. Hsieh (2013) Increasing zooplankton size diversity enhances the strength of top-down control on phytoplankton through diet niche partitioning. Journal of Animal Ecology. 85: 1052-1061. http://onlinelibrary.wiley.com/doi/10.1111/1365-2656.12067/full

Chang F. H., E. Marguis, C. W. Chang, G. C. Gong, and C. H. Hsieh (2013). Scaling of growth rate and mortality with size and its consequence on size spectra of natural microphytoplankton assemblages in the East China Sea. Biogeosciences. 10: 5267-5280. http://www.biogeosciences.net/10/5267/2013/bg-10-5267-2013.html

Lin, K. Y., A. R. Sastri, G. C. Gong, and C. H. Hsieh (2013) Copepod community growth rates in relation to body size, temperature, and food availability in the East China Sea - a test of metabolic theory. Biogeosciences. 10: 1-16. http://www.biogeosciences.net/10/1877/2013/bg-10-1877-2013.html

Deyle, E., M. F. Fogarty, C. H. Hsieh, L. Kaufman, A. MacCall, S. B. Munch, C. Perretti, H. Ye, and G. Sugihara (2013) Predicting climate effects on Pacific sardine. Proceedings of the National Academy of Sciences, USA. 110: 6430-6435. http://dx.doi.org/10.1073/pnas.1215506110

Ho, P. C., C. W Chang, C. H. Hsieh, F. K. Shiah, and T. Miki (2013) Effects of increasing nutrient supply and omnivorous feeding on the slope of size spectrum: a size-based nutrient-phytoplankton-zooplankton model. Population Ecology. 55: 247-259. http://dx.doi.org/10.1007/s10144-013-0368-3

Lin, W. T., C. H. Hsieh and T. Miki (2013) Difference in adaptive dispersal abilities can promote species coexistence in fluctuating environments. PLoS ONE 8: e55218. http://dx.doi.org/10.1371/journal.pone.0055218

Lin, K. Y., A. R. Sastri, and C. H. Hsieh (2013) A kernel-based method for estimating copepod growth rates when biomass distribution is multi-modal. Zoological Studies, 52: 14. http://link.springer.com/article/10.1186%2F1810-522X-52-14

Hsu, S. B., C. L. Lin, C. H. Hsieh, and K. Yoshiyama (2013) Dynamics of phytoplankton community under photoinhibition. Bulletin of Mathematical Biology. 75: 1207-1232. http://link.springer.com/article/10.1007%2Fs11538-013-9852-3

Liu, H. C. C. Y. Shih, G. C. Gong, T. Y. Ho, F. K. Shiah, C. H. Hsieh, and J. Chang (2013) Discrimination between the influences of river discharge and coastal upwelling on summer microphytoplankton phosphorus stress in the East China Sea. Continental Shelf Research. 60: 104-112. http://www.sciencedirect.com/science/article/pii/S0278434313001179

Sugihara, G., R. May, H. Ye, C. H. Hsieh, E. Deyle, M. Fogarty, and S. Munch (2012) Detecting causality in complex ecosystems. Science 338: 496-500. http://dx.doi.org/10.1126/science.1227079

Lu, S. P., Y. B. Wang, S. W. Huang, C. Y. Lin, M. Wu, C. H. Hsieh, and H. T. Yu (2012) Metagenomic analysis reveals a functional signature for biomass degradation by cecal microbiota in the leaf-eating flying squirrel (Petaurista alborufus lena). BMC Genomics 13: 466. http://dx.doi.org/10.1186/1471-2164-13-466

Briones, J. C., C. H. Tsai, T. Nakazawa, Y. Sakai, R. D. Papa, C. H. Hsieh, and N. Okuda. (2012) Long-term change in the diet of Gymnogobius isaza from Lake Biwa, Japan: effects of body size and prey availability. PLoS ONE 7: e53167. http://dx.doi.org/10.1371/journal.pone.0053167

Liu, H., M. J. Fogarty, S. M. Glaser, I. Altman, C. H. Hsieh, L. Kaufman, A. A. Rosenberg, G. Sugihara (2012) Nonlinear dynamic features and co-predictability of the Georges Bank fish community. Marine Ecology Progress Series 464: 195-207. http://dx.doi.org/10.3354/meps09868

Tu, C. Y., Y. H. Tzeng, T. S. Chiu, and C. H. Hsieh (2012) Using coupled fish behavior-hydrodynamic model to investigate spawning migration of Japanese anchovy, Engraulis japonicus, from the East China Sea to Taiwan. Fisheries Oceanography. 21:255-268. http://dx.doi.org/10.1111/j.1365-2419.2012.00619.x

Tzeng, W. N. Y. H. Tzeng, Y. S. Han, C. C. Hsu, C. W. Chang, S. Jan, E. Di Lorenzo, and C. H. Hsieh (2012). Evaluation of multi-scale climate effects on the recruitment of Japanese eel, Anguilla japonica, to Taiwan. PLoS One 7:e30805. http://dx.doi.org/10.1371/journal.pone.0030805

Chang C. Y., P. C. Ho, A. Sastri, Y. C. Lee, G. C. Gong, and C. H. Hsieh (2012) Methods of training set construction toward improving classification performance for automated mesozooplankton image classification system. Continental Shelf Research. 36: 19-28. http://dx.doi.org/10.1016/j.csr.2012.01.005

Chiao, L. Y., C. H. Hsieh, and T. S. Chiu (2012) Exploring spatialtemporal ecological variations by the multiscale interpolation. Ecological Modelling 246: 26-33. http://www.sciencedirect.com/science/article/pii/S030438001200364X

Sugihara, G., J. Beddington, C. H. Hsieh, E. Deyle, M. Fogarty, S. Glaser, R. Hewitt, A. Hollowed, R. M. May, S. Munch, C. Perretti, A. Rosenberg, S. Sandin, and H. Ye. (2011) Are exploited fish population stable? Proceedings of the National Academy of Sciences, USA. 108: E1224-E1225. http://dx.doi.org/10.1073/pnas.1112033108

Ye, L., C. Y. Chang, and C. H. Hsieh (2011) Bayesian model for semi-automated zooplankton classification with predictive confidence and rapid category aggregation. Marine Ecology Progress Series. 441: 185-196. http://www.int-res.com/abstracts/meps/v441/p185-196/

Hsieh, C. H., Y. Sakai, S. Ban, K. Ishikawa, T. Ishikawa, S. Ichise, N. Yamamura, and M. Kumagai (2011) Eutrophication and warming effects on long-term variation of zooplankton in Lake Biwa. Biogeosciences 8: 1383-1399. http://www.biogeosciences.net/8/1383/2011/

Gong, G. C., K. K. Liu, K. P. Chiang, T. M. Hsiung, J. Chang, C. C. Chen, C. C. Hung, W. C. Chou, C. C. Chung, H. Y. Chen, F. K. Shiah, A. Y. Tsai, C. H. Hsieh, J. J. Shiao, C. M. Tseng, S. C. Hsu, H. J. Lee, M. A. Lee, I. I. Lin, and F. Tsai (2011) Yangtze River floods enhance coastal ocean phytoplankton biomass and potential fish production. Geophysical Research Letters. 38: L13603. http://dx.doi.org/10.1029/2011GL047519

Hsieh, C. H., K. Ishikawa, Y. Sakai, T. Ishikawa, S. Ichise, Y. Yamamoto, T. C. Kuo, H. D. Park, N. Yamamura, and M. Kumagai (2010) Phytoplankton community reorganization driven by eutrophication and warming in Lake Biwa. Aquatic Sciences. 72: 467-483. http://dx.doi.org/10.1007/s00027-010-0149-4

Hsieh, C.H., A. Yamauchi, T. Nakazawa, W.F. Wang (2010) Fishing effects on age and spatial structures undermine population stability of fishes. Aquatic Sciences 72: 165-178. http://dx.doi.org/10.1007/s00027-009-0122-2

Nakazawa, T., Y. Sakai, C.H. Hsieh, T. Koitabashi, I. Tayasu, N. Yamamura, and N. Okuda. (2010) Is the body size and trophic niche position time-invariant in a freshwater goby? First stable isotope evidence. PLoS One. 5: e9120. http://dx.doi.org/10.1371/journal.pone.0009120

Hsieh, C.H., H.J. Kim, W. Watson, E. Di Lorenzo, and G. Sugihara (2009) Climate-driven changes in abundance and distribution of larvae of oceanic fishes in the southern California region. Global Change Biology. 15: 2137-2152. http://dx.doi.org/10.1111/j.1365-2486.2009.01875.x

Hsieh, C.H., C.S. Chen, T.S. Chiu, K.T. Lee, Shieh, H.Z., J.Y. Pan, and M.A. Lee (2009) Time series analysis reveal transient relationships between abundance of larval anchovy and environmental variables in the coastal waters southwest of Taiwan. Fisheries Oceanography 18: 102-117. http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2419.2008.00498.x/abstract

Chan, Y.F., A.Y. Tsai, K.P. Chiang, and C.H. Hsieh (2009) The grazing impact of the different size of pigmented nanoflagellates on Synechococcus in the coastal ecosystem of subtropical western Pacific. Microbial Ecology. 58: 548-557. http://dx.doi.org/10.1007/s00248-009-9569-x

Ko, C.Y., R.S., Lin, T.S. Ding, C.H., Hsieh, and P.F. Lee. (2009) Identifying biodiversity hotspots by predictive models: a case study using Taiwan’s endemic bird species. Zoological Studies. 48: 418-431. http://zoolstud.sinica.edu.tw/Journals/48.3/418.pdf

Hsieh, C.H., C. Anderson, and G. Sugihara (2008) Extending nonlinear analysis to short ecological time series. American Naturalist. 171: 71-80. http://dx.doi.org/10.1086/524202

Hsieh, C.H., S.C. Reiss, R.P. Hewitt, G. Sugihara (2008) Spatial analysis shows fishing enhances the climatic sensitivity of marine fishes. Canadian Journal of Fisheries and Aquatic Sciences, 65: 947-961. http://dx.doi.org/10.1139/F08-017

Anderson, C.N.K., C.H. Hsieh, S.A. Sandin, R. Hewitt, A. Hollowed, J. Beddington, R.M. May, and G. Sugihara (2008). Why fishing magnifies fluctuations in fish abundance. Nature, 452: 835-839. http://dx.doi.org/10.1038/nature06851

Ohman, M.D. and C. H. Hsieh (2008) Spatial differences in mortality of Calanus pacificus within the California Current System. Journal of Plankton Research. 30:359-366. http://dx.doi.org/10.1093/plankt/fbm110

Maye, A., C.H. Hsieh, G. Sugihara, and B. Brembs (2007) Order in spontaneous behavior. PloS One. 2: e443. http://dx.doi.org/10.1371/journal.pone.0000443

Hsieh, C.H., S.C. Reiss, J. R. Hunter, J.R. Beddington, R. M. May, and G. Sugihara (2006) Fishing elevates variability in the abundance of exploited species. Nature. 443: 859-862. http://dx.doi.org/10.1038/nature05232

Hsieh, C.H., and M.D. Ohman (2006) Biological responses to environmental forcing: The Linear Tracking Window hypothesis. Ecology, 87: 1932-1938. http://dx.doi.org/10.1890/0012-9658(2006)87[1932:BRTEFT]2.0.CO;2

Hsieh, C.H., S.M. Glaser, A.J. Lucas, and G. Sugihara (2005) Distinguishing random environmental fluctuations from ecological catastrophes for the North Pacific Ocean. Nature. 435: 336-340. http://dx.doi.org/10.1038/nature03553

Hsieh, C.H., C. Reiss, W. Watson, M.J. Allen, J. R. Hunter, R. N. Lea, R.H. Rosenblatt, P. E. Smith, and G. Sugihara (2005) A comparison of long-term trends and variability in populations of larvae of exploited and unexploited fishes in the Southern California region: a community approach. Progress in Oceanography. 67: 160-185. http://dx.doi.org/10.1016/j.pocean.2005.05.002

Hsieh, C.H., C. S. Chen, and T.S. Chiu (2005) Composition and abundance of copepod and ichthyoplankton in the Taiwan Strait (western North Pacific) in relation to seasonal marine conditions. Marine and Freshwater Research, 56: 153-161. http://dx.doi.org/10.1071/MF04058

Hsieh, C.H., T.S. Chiu, and C.-t. Shih (2004) Copepod diversity and composition as indicators of the intrusion of the Kuroshio Branch Current into the Northern Taiwan Strait in Spring, 2000. Zoological Studies, 43: 393-403. http://zoolstud.sinica.edu.tw/Journals/43.2/393.pdf

Hsieh, C.H. and T.S. Chiu (2002) Summer spatial distribution of copepods and fish larvae in relation to hydrography in the northern Taiwan Strait. Zoological Studies, 41: 85-98. http://zoolstud.sinica.edu.tw/Journals/41.1/85.pdf

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